Bonding Bases

10. Like-with-like structure

Having seen the X-ray photograph of the B form of DNA, Watson worked out that it was a helix which repeated its pattern along its axis every 3.4 nanometres. He presented this evidence to Professor Bragg and asked permission to get on with building models of possible structures. Bragg agreed, and the machinist in the Cavendish began making models of the molecules involved.

Data obtained by X-ray diffraction and with electron microscopes showed that the bases were stacked on top of each other, 0.3 nanometres apart and at right angles to the axis of the helix. The helix was about 2 nanometres in diameter.

In their first model Watson and Crick had tried putting the sugar-phosphate backbone of DNA in the centre of the molecule, so they wouldn't need to worry about fitting the bases together. Watson now tried the opposite, building a two chain molecule with the backbones on the outside. Watson thought that hydrogen bonds might hold the bases together between the backbones.

To his surprise, it seemed that each of the four bases could hydrogen bond with another base of the same type. Thymine could bond with thymine, adenine with adenine, cytosine with cytosine and guanine with guanine. This would explain how DNA carries genetic information, as each chain would be exactly the same!

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